smlmlp.Config module
- class smlmlp.Config(*tif_paths, config=None, locs=None, **kwargs)[source]
Bases:
objectStore configuration values in an object that can be saved and loaded.
- Parameters:
*tif_paths – TIFF paths used to initialize frame and camera dimensions.
config (Config, dict, path-like, or None, default=None) – Existing configuration source.
locs (Locs or None, default=None) – Optional localization container used for data-dependent defaults.
**kwargs – Configuration metadata values to assign.
- cameras
Camera metadata containers.
- Type:
list[Camera]
Examples
>>> from smlmlp import Config >>> instance = Config()
- property FOV_max_um
Return FOV max um.
- property aim_frames_per_segment
Return getter.
- property aim_kde_bandwidth_nm
Return getter.
- property aim_lambda_smooth
Return getter.
- property aim_learning_rate
Return getter.
- property aim_max_iter
Return getter.
- property aim_outlier_fraction
Return getter.
- property aim_recompute
Return getter.
- property aim_tol
Return getter.
- property azimuth_method
Return getter.
- property biplane_x_channels
Return getter.
- property biplane_y_channels
Return getter.
- property blink_association_radius_nm
Return getter.
- property blink_z_association_radius_nm
Return getter.
- property cameras_QE
Return getter.
- property cameras_bboxes
Return camera property.
- property cameras_bits
Return getter.
- property cameras_camera_indices
Return camera property.
- property cameras_constructor_gains
Return getter.
- property cameras_experimental_gains
Return getter.
- property cameras_gains
Return camera property.
- property cameras_nchannels
Return getter.
- property cameras_npixels
Return getter.
- property cameras_pixels_nm
Return getter.
- property cameras_read_noises
Return getter.
- property channel_association_radius_nm
Return getter.
- property channels
Return channels.
- property channels_QE
Return channel property.
- property channels_bboxes
Return channel property.
- property channels_bits
Return channel property.
- property channels_camera_indices
Return channel property.
- property channels_channel_indices
Return channel property.
- property channels_constructor_gains
Return channel property.
- property channels_crops_pix
Return channel property.
- property channels_default_crops_nm
Return channel property.
- property channels_experimental_gains
Return channel property.
- property channels_fit_inits
Return channel property.
- property channels_fit_models
Return getter.
- property channels_fit_thetas
Return getter.
- property channels_flips
Return getter.
- property channels_gains
Return channel property.
- property channels_image_transform_matrices
Return channel property.
- property channels_locs_transform_matrices
Return channel property.
- property channels_nchannels
Return channel property.
- property channels_npixels
Return channel property.
- property channels_pixels_nm
Return channel property.
- property channels_psf_3d_spline_coeffs
Return getter.
- property channels_psf_3d_xtangents
Return getter.
- property channels_psf_3d_ytangents
Return getter.
- property channels_psf_3d_ztangents
Return getter.
- property channels_psf_diameters_nm
Return channel property.
- property channels_psf_fwhms_nm
Return channel property.
- property channels_psf_kernels
Return channel property.
- property channels_psf_radii_nm
Return channel property.
- property channels_psf_sigmas_nm
Return channel property.
- property channels_psf_spline_coeffs
Return getter.
- property channels_psf_thetas_deg
Return getter.
- property channels_psf_xsigmas_nm
Return getter.
- property channels_psf_xtangents
Return getter.
- property channels_psf_ysigmas_nm
Return getter.
- property channels_psf_ytangents
Return getter.
- property channels_read_noises
Return channel property.
- property channels_rotations_deg
Return getter.
- property channels_shapes
Return channels shapes.
- property channels_spatial_kernel_shapes
Return channel property.
- property channels_spatial_kernels
Return channel property.
- property channels_weighted_integrations
Return getter.
- property channels_wf_images
Return getter.
- property channels_x_shears
Return getter.
- property channels_x_shifts_nm
Return getter.
- property channels_y_shears
Return getter.
- property channels_y_shifts_nm
Return getter.
- property chunk
Return chunk.
- property comet_frames_per_segment
Return getter.
- property comet_max_drift_nm
Return getter.
- property comet_recompute
Return getter.
- property comet_tol
Return getter.
- property crop_nm
Return getter.
- property crosscorr_frames_per_segment
Return getter.
- property crosscorr_outlier_fraction
Return getter.
- property crosscorr_recompute
Return getter.
- property cuda
Return getter.
- property dbscan_eps
Return getter.
- property dbscan_min_points
Return getter.
- property demix2d_method
Return getter.
- property demix_method
Return getter.
- property distribution
Return getter.
- property do_spatial_filter
Return getter.
- property do_spatial_mean
Return getter.
- property do_spatial_opening
Return getter.
- property do_temporal_filter
Return getter.
- property do_temporal_median
Return getter.
- property donald_x_channels
Return getter.
- property donald_y_channels
Return getter.
- property dpflim_x_channels
Return getter.
- property dpflim_y_channels
Return getter.
- property drift_method
Return getter.
- property dyes
Return getter.
- property estimator
Return getter.
- property exposure_ms
Return getter.
- property frame_bytes
Return frame bytes.
- property frames_per_sequence
Return getter.
- property glob_pixel_nm
Return glob pixel nm.
- property globdet_groups
Return getter.
- property globdet_mode
Return getter.
- property globdet_use
Return getter.
- property globloc_use
Return getter.
- property iflim_x_channels
Return getter.
- property iflim_y_channels
Return getter.
- property intensity_channels
Return getter.
- property irradiance_image
Return getter.
- property lifetime_iflim_calibration
Return getter.
- property lifetime_method
Return getter.
- property loaded
Return getter.
- property mean_radius_nm
Return getter.
- property meanshift_frames_per_segment
Return getter.
- property meanshift_max_drift_nm
Return getter.
- property meanshift_max_iter
Return getter.
- property meanshift_outlier_fraction
Return getter.
- property meanshift_recompute
Return getter.
- property meanshift_tol_nm
Return getter.
- property median_window_fr
Return median window fr.
- property median_window_ms
Return getter.
- property metadata
Return explicitly stored metadata grouped by metadata section.
- property modloc_axial_angle_deg
Return getter.
- property modloc_channels_indices
Return getter.
- property modloc_dephases_rad
Return getter.
- property modloc_sequential_frames
Return getter.
- property modloc_transverse_angle_deg
Return getter.
- property ncameras
Return getter.
- property nchannels
Return nchannels.
- property ndyes
Return ndyes.
- property nframes
Return getter.
- property on_time_kernel
Return on time kernel.
- property on_time_ms
Return getter.
- property opening_radius_nm
Return getter.
- property optimizer
Return getter.
- property pad
Return pad.
- property parallel
Return getter.
- property phase_method
Return getter.
- property pixel_sr_nm
Return getter.
- property snr_thresh
Return getter.
- property spatial_subtract_factor
Return getter.
- property spectral_x_channels
Return getter.
- property spectral_y_channels
Return getter.
- property temporal_kernel
- property temporal_kernel_shape
Return temporal kernel shape.
- property temporal_subtract_factor
Return getter.
- property temporal_subtract_kernel
Return temporal subtract kernel.
- property tilt_method
Return getter.
- property track_association_radius_nm
Return getter.
- property x_channels
Return getter.
- property x_method
Return getter.
- property x_timeloc_calibration
Return getter.
- property y_channels
Return getter.
- property y_method
Return getter.
- property y_timeloc_calibration
Return getter.
- property z_astig_calibration
Return getter.
- property z_biplane_calibration
Return getter.
- property z_channels
Return getter.
- property z_donald_calibration
Return getter.
- property z_method
Return getter.
- property z_miet_calibration
Return getter.
- property z_qtirf_calibration
Return getter.
- property z_timeloc_calibration
Return getter.
- property zstack_speed
Return getter.